Microbial whole-genome sequencing pipeline live

Run genomics analyses
in the cloud.

Analyse sequencing data using validated bioinformatics workflows without installing multiple bioinformatics tools and leverage secure, scalable cloud computing to run analyses efficiently.

Select an analysis, upload your sequencing data, run the pipeline in the cloud, and download your results from anywhere using only an internet connection.

Automated Pipelines No Installation Required No Coding Required Cloud-Based & Secure AWS Infrastructure Results in Hours Downloadable Results Pay for what you need
Why Genomix Cloud

Removing the technical barriers to genomic analysis

Research teams spend too much time installing and configuring tools, provisioning compute resources, and executing repetable analysis workflows instead of focusing on genomic insights.

FASTQ files
Genomix Cloud Platform
Quality
Assembly
Annotation
Resistance
Taxonomy
Interactive results
Downloadable outputs
No Software Installation

Upload your sequencing data through your web browser and run it using validated bioinformatics workflows. There is no software to install, configure, or maintain. Analyses are pre-built and ready to use without the need of techical skills.

Fully Managed Open-Source Bioinformatics Tools

Every workflow is built using widely adopted open-source bioinformatics tools that are described in reviewed publications. Tool versions and configuration are managed and fully citable.

Scalable Cloud Computing

Whether you are analysing a single sample or hundreds, our AWS infraestructure provides cloud computing resources scale automatically to match your analysis computer needs. There is no infrastructure to manage.

Results for Downstream Research

Every analysis generates interactive reports and downloadable output files, enabling researchers to review results, perform downstream analyses, and integrate findings into their existing research workflows.

From FASTQ Files to Research Results

A streamlined workflow for sequencing data analysis

One platform, five steps. Follow a transparent workflow from your initial upload to downloadable results for downstream research.

01

Select pipeline

Validated, open-source workflows pre-configured by bioinformatics specialists.

02

Run analysis

Upload FASTQ files directly. No local installation or scripting required.

03

Cloud processing

Processed on AWS infrastructure, encrypted in transit and at rest.

04

Interactive reports

Structured, explorable results — built for scrutiny, not just presentation.

05

Download results

CSV tables and output files, ready for downstream analysis or publication.

Platform capabilities

A growing library of bioinformatics pipelines

Genomix Cloud supports both ready-to-use analyses and custom pipeline integration, enabling research teams to run the workflows they need without managing complex infrastructure. All analyses are intended for Research Use Only.

Available Pipelines

Start with validated workflows developed and tested for reliable genomic analysis.

Roadmap

These pipelines are planned for future development, prioritised based on research needs.

Metagenomics

Taxonomic profiling, functional annotation, and diversity analysis for complex microbial communities.

Roadmap

Cancer Mutation

Somatic variant calling, copy number analysis, and mutational signature extraction from tumour sequencing.

Roadmap

Advanced Paternity

Statistical parentage testing using 2bRAD-Seq with probabilistic genotyping-by-sequencing for forensic applications.

Roadmap

Transcriptome

RNA-Seq alignment, differential expression analysis, assembly, and single-cell RNA workflows.

Roadmap

Request a Pipeline

Don’t see the analysis you need? Work with our team to integrate your existing pipeline
or develop support for a new workflow tailored to your research requirements.

Talk to us about your workflow
In the lab

“Every research team has different analytical needs. We built Genomix Cloud to provide a flexible foundation for genomic analysis—combining validated workflows with the ability to integrate new pipelines and adapt to evolving research requirements.”

Genomix Cloud Team

Ready to run your analysis in the cloud?

Join the early users exploring a new way to run bioinformatics pipelines. Sign up for a free trial — no credit card required.