Microbial whole-genome sequencing pipeline live

Run genomics analyses
in the cloud.

Analyse sequencing data using validated bioinformatics workflows without installing multiple bioinformatics tools and leverage secure, scalable cloud computing to run analyses efficiently.

Select an analysis, upload your sequencing data, run the pipeline in the cloud, and download your results from anywhere using only an internet connection.

Automated Pipelines No Installation Required No Coding Required Cloud-Based & Secure AWS Infrastructure Results in Hours Downloadable Results Pay for what you need
Why Genomix Cloud

Removing the technical barriers to genomic analysis

Research teams spend too much time setting up software and servers, and not enough time on the science itself.

FASTQ files
Genomix Cloud Platform
Quality
Assembly
Annotation
Resistance
Taxonomy
Interactive results
Downloadable outputs
No Software Installation

Upload your data through a secure link and run it with ready-to-use, validated workflows. Nothing to install or maintain, and no technical skills needed.

Automated Workflows with Open-Source Bioinformatics Tools

Every workflow uses trusted, widely-used open-source tools backed by published research. We manage technical configuration for you.

Scalable Cloud Computing

Whether you’re analysing one sample or hundreds, our cloud infrastructure scales automatically to match computing needs.

Results for Downstream Research

Every analysis gives you an interactive report and downloadable files, ready to review, reuse, or plug into your own pipeline.

Building it yourself versus using Genomix Cloud
Building it yourself With Genomix Cloud
Install dependencies Upload FASTQ
Configure tools Run validated workflow
Manage databases Review report
Write scripts Download results
Troubleshoot failures
Maintain versions
Manage compute
From FASTQ Files to Research Results

A streamlined workflow for sequencing data analysis

One platform, five steps. Follow a transparent workflow from your initial upload to downloadable results for downstream research.

01

Select pipeline

Validated, open-source workflows pre-configured by bioinformatics specialists.

02

Run analysis

Upload FASTQ files through a secure link. No local installation or scripting required.

03

Cloud processing

Processed on AWS infrastructure, encrypted in transit and at rest.

04

Interactive reports

Structured, explorable results — built for scrutiny, not just presentation.

05

Download results

CSV tables and output files, ready for downstream analysis or publication.

Platform capabilities

A growing library of bioinformatics pipelines

Genomix Cloud supports both ready-to-use analyses and custom pipeline integration, enabling research teams to run the workflows they need without managing complex infrastructure. All analyses are intended for Research Use Only.

Available Pipelines

Start with validated workflows developed and tested for reliable genomic analysis.

Roadmap

These pipelines are planned for future development, prioritised based on research needs.

Metagenomics

Taxonomic profiling, functional annotation, and diversity analysis for complex microbial communities.

Roadmap

Cancer Mutation

Somatic variant calling, copy number analysis, and mutational signature extraction from tumour sequencing.

Roadmap

Advanced Paternity

Statistical parentage testing using 2bRAD-Seq with probabilistic genotyping-by-sequencing for forensic applications.

Roadmap

Transcriptome

RNA-Seq alignment, differential expression analysis, assembly, and single-cell RNA workflows.

Roadmap

Request a Pipeline

Don’t see the analysis you need? Work with our team to integrate your existing pipeline.

Talk to us about your workflow

Ready to run your analysis in the cloud?

Join the early users exploring a new way to run bioinformatics pipelines. Sign up for a free trial — no credit card required.